phenote.config
Class FieldConfig

java.lang.Object
  phenote.config.FieldConfig

public class FieldConfig
extends java.lang.Object

Constructor Summary

FieldConfig(CharFieldEnum fieldEnum, CharField cf)
for auto fields like date_created

FieldConfig(phenote.config.xml.FieldDocument.Field fieldBean, Config cfg)
construct from xml bean field - READ

FieldConfig(java.lang.String label, java.lang.String displayName, Config cfg)

Method Summary

(package private) void	addOntologyConfig(OntologyConfig o)
boolean	copies() specifies whether to copy field to new character when char is duplicated default is true, db ids generally shouldnt copy
CharField	getCharField() Actually creates char field if null, as char fields utimately come from field configs - so this is funny but its actually not funny
int	getColwidth()
(package private) Config	getConfig()
java.lang.String	getDataTag() First tries to return explicitly set datatag, 2nd syn abbrev, 3rd label w _
java.lang.String	getDesc()
phenote.config.xml.FieldDocument.Field	getFieldBean() return xml bean for field -always non null
java.lang.String	getLabel()
int	getMinCompletionChars() Return the amount of letters/chars a user has to type before completion kicks in - this helps with slow completion with many ontologies on a slow computer
(package private) int	getOntCfgIndex(OntologyConfig oc)
(package private) OntologyConfig	getOntConfig(java.lang.String name) return OC with name - null if none
java.util.List<OntologyConfig>	getOntologyConfigList()
java.lang.String	getPickSourceFieldName()
(package private) java.lang.String	getSyntaxAbbrev() gets from datatag then label if no syntax abbrev explicitly set, replaces spaces with underscores in label as pheno syntax is sensitive to spaces (in theory at least)
phenote.config.xml.FieldDocument.Field.Type.Enum	getType()
(package private) boolean	hasCharField(CharField cf)
(package private) boolean	hasDesc(java.lang.String desc)
(package private) boolean	hasLabel(java.lang.String label)
(package private) boolean	hasOntConfig(OntologyConfig oc)
boolean	hasOntologies()
boolean	hasOntology()
(package private) boolean	hasSyntaxAbbrev(java.lang.String abb) Test both syntaxAbbrev & label - also test for replacing spaces with underscores
(package private) boolean	inGroup(java.lang.String group)
(package private) void	insertOntologyConfig(int index, OntologyConfig o)
boolean	isComparison()
boolean	isEnabled()
boolean	isID()
boolean	isVisible()
(package private) void	makeConstraint() if required then make RequiredConstraint if warnIfNull make RequiredConstraint with warning
(package private) void	mergeWithOldConfig(Config oldConfig, Config thisCfg)
void	setCharField(CharField cf)
void	setColwidth(int w)
(package private) void	setDataTag(java.lang.String dt) DataTag should replace syntax abbrev has a handle to the field, used by DataInputServlet (and should be used by syn adapter)
void	setEnabled(boolean e)
void	setIsVisible(boolean vis)
void	setLabel(java.lang.String label)
(package private) void	setOntologyConfigList(java.util.List<OntologyConfig> configs)
(package private) void	setSyntaxAbbrev(java.lang.String syn)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

FieldConfig

FieldConfig(phenote.config.xml.FieldDocument.Field fieldBean,
            Config cfg)

construct from xml bean field - READ

FieldConfig

public FieldConfig(java.lang.String label,
                   java.lang.String displayName,
                   Config cfg)

FieldConfig

public FieldConfig(CharFieldEnum fieldEnum,
                   CharField cf)

for auto fields like date_created

Method Detail

getConfig

Config getConfig()

getFieldBean

public phenote.config.xml.FieldDocument.Field getFieldBean()

return xml bean for field -always non null

makeConstraint

void makeConstraint()

if required then make RequiredConstraint if warnIfNull make RequiredConstraint with warning

getLabel

public java.lang.String getLabel()

hasLabel

boolean hasLabel(java.lang.String label)

setLabel

public void setLabel(java.lang.String label)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getType

public phenote.config.xml.FieldDocument.Field.Type.Enum getType()

isID

public boolean isID()

isComparison

public boolean isComparison()

getDesc

public java.lang.String getDesc()

getColwidth

public int getColwidth()

setColwidth

public void setColwidth(int w)

getMinCompletionChars

public int getMinCompletionChars()

Return the amount of letters/chars a user has to type before completion kicks in - this helps with slow completion with many ontologies on a slow computer

hasDesc

boolean hasDesc(java.lang.String desc)

hasOntologies

public boolean hasOntologies()

hasOntology

public boolean hasOntology()

getPickSourceFieldName

public java.lang.String getPickSourceFieldName()

addOntologyConfig

void addOntologyConfig(OntologyConfig o)

insertOntologyConfig

void insertOntologyConfig(int index,
                          OntologyConfig o)

hasOntConfig

boolean hasOntConfig(OntologyConfig oc)

getOntConfig

OntologyConfig getOntConfig(java.lang.String name)

return OC with name - null if none

setOntologyConfigList

void setOntologyConfigList(java.util.List<OntologyConfig> configs)

getOntologyConfigList

public java.util.List<OntologyConfig> getOntologyConfigList()

getOntCfgIndex

int getOntCfgIndex(OntologyConfig oc)

setSyntaxAbbrev

void setSyntaxAbbrev(java.lang.String syn)

getSyntaxAbbrev

java.lang.String getSyntaxAbbrev()

gets from datatag then label if no syntax abbrev explicitly set, replaces spaces with underscores in label as pheno syntax is sensitive to spaces (in theory at least)

setDataTag

void setDataTag(java.lang.String dt)

DataTag should replace syntax abbrev has a handle to the field, used by DataInputServlet (and should be used by syn adapter)

getDataTag

public java.lang.String getDataTag()

First tries to return explicitly set datatag, 2nd syn abbrev, 3rd label w _

hasSyntaxAbbrev

boolean hasSyntaxAbbrev(java.lang.String abb)

Test both syntaxAbbrev & label - also test for replacing spaces with underscores

isVisible

public boolean isVisible()

setIsVisible

public void setIsVisible(boolean vis)

isEnabled

public boolean isEnabled()

setEnabled

public void setEnabled(boolean e)

copies

public boolean copies()

specifies whether to copy field to new character when char is duplicated default is true, db ids generally shouldnt copy

setCharField

public void setCharField(CharField cf)

getCharField

public CharField getCharField()

Actually creates char field if null, as char fields utimately come from field configs - so this is funny but its actually not funny

hasCharField

boolean hasCharField(CharField cf)

inGroup

boolean inGroup(java.lang.String group)

mergeWithOldConfig

void mergeWithOldConfig(Config oldConfig,
                        Config thisCfg)