phenote.dataadapter
Class AbstractFileAdapter

java.lang.Object
  phenote.dataadapter.AbstractFileAdapter

All Implemented Interfaces:

DataAdapterI

Direct Known Subclasses:

AnnotationOBOFileAdapter, AnnotationOWLFileAdapter, DelimitedFileAdapter, NEXUSAdapter, PhenoSyntaxFileAdapter, PhenoXmlAdapter

public abstract class AbstractFileAdapter
extends java.lang.Object
implements DataAdapterI

Field Summary

protected java.io.File

file

Constructor Summary

protected

AbstractFileAdapter(java.lang.String[] exts, java.lang.String description)

Method Summary

java.lang.String	getDescription()
java.util.List<java.lang.String>	getExtensions()
boolean	hasExtension(java.lang.String ext) should both be in DataAdapterI convenience and in an AbstactDataAdapter?
void	setAdapterValue(java.lang.String filename) Set value to use for loading or writeback, for a file adapter this would be the file name - is there a better name for this method? For now just doing String - which may be sufficient - may need an AdapterValue/DataInput object if this gets more involved - but that may not be necasary - certianly string ok for now rename setFilename???
protected void	setDescription(java.lang.String d)
protected void	setExtensions(java.lang.String[] exts)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface phenote.dataadapter.DataAdapterI

commit, commit, load, load

Field Detail

file

protected java.io.File file

Constructor Detail

AbstractFileAdapter

protected AbstractFileAdapter(java.lang.String[] exts,
                              java.lang.String description)

Method Detail

setAdapterValue

public void setAdapterValue(java.lang.String filename)

Set value to use for loading or writeback, for a file adapter this would be the file name - is there a better name for this method? For now just doing String - which may be sufficient - may need an AdapterValue/DataInput object if this gets more involved - but that may not be necasary - certianly string ok for now rename setFilename???

Specified by:

setAdapterValue in interface DataAdapterI

setExtensions

protected void setExtensions(java.lang.String[] exts)

getExtensions

public java.util.List<java.lang.String> getExtensions()

Specified by:

getExtensions in interface DataAdapterI

hasExtension

public boolean hasExtension(java.lang.String ext)

should both be in DataAdapterI convenience and in an AbstactDataAdapter?

Specified by:

hasExtension in interface DataAdapterI

setDescription

protected void setDescription(java.lang.String d)

getDescription

public java.lang.String getDescription()

Specified by:

getDescription in interface DataAdapterI