phenote.dataadapter.annotation
Class AnnotationOBOFileAdapter

java.lang.Object
  phenote.dataadapter.AbstractFileAdapter
      phenote.dataadapter.annotation.AnnotationOBOFileAdapter

All Implemented Interfaces:

DataAdapterI

public class AnnotationOBOFileAdapter
extends AbstractFileAdapter

I think chris wrote this? reads & writes obo files with annotations, I believe this currently writes out the whole obo session terms and all, which need to be filtered out

Constructor Summary

AnnotationOBOFileAdapter()

Method Summary

void	commit(CharacterListI charList)
void	commit(CharacterListI charList, java.io.File f)
void	load() this should return CharacterList and caller should load CharListMan or CLM makes the call itself?
CharacterListI	load(java.io.File f)
void	setAdapterValue(java.lang.String filename) command line setting of file

Methods inherited from class phenote.dataadapter.AbstractFileAdapter

getDescription, getExtensions, hasExtension, setDescription, setExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationOBOFileAdapter

public AnnotationOBOFileAdapter()

Method Detail

setAdapterValue

public void setAdapterValue(java.lang.String filename)

command line setting of file

Specified by:

setAdapterValue in interface DataAdapterI

Overrides:

setAdapterValue in class AbstractFileAdapter

load

public void load()

this should return CharacterList and caller should load CharListMan or CLM makes the call itself?

load

public CharacterListI load(java.io.File f)

commit

public void commit(CharacterListI charList)

commit

public void commit(CharacterListI charList,
                   java.io.File f)