Uses of Interface
phenote.dataadapter.OntologyMakerI

Packages that use OntologyMakerI

phenote.config
phenote.dataadapter	Generalized methods for creating customized Data Adapters
phenote.dataadapter.fly
phenote.dataadapter.worm
phenote.gui.actions

Uses of OntologyMakerI in phenote.config

Methods in phenote.config that return OntologyMakerI

OntologyMakerI

Config.getOntMaker(java.lang.String group)

Methods in phenote.config that return types with arguments of type OntologyMakerI

java.util.List<OntologyMakerI>

Config.getOntMakers()

Uses of OntologyMakerI in phenote.dataadapter

Subinterfaces of OntologyMakerI in phenote.dataadapter

interface

GroupAdapterI group adapters originally were groups of fields this is not, but one thing group adapters do is make terms/ontology on the fly - and thats what this does - but it does make ya wanna change the name of GroupAdap if it applies to things that arent even groups of terms maybe TermMaker? theres really 2 things going on - grouping of fields and making of terms - and character template which is a grouping of fields but it makes truncated char lists not terms - but char temp is not a group adapteri but maybe should be? - hmmmm - i think grouping of fields needs to be separated from making of terms and making of characters - i think group adapter should be renamed TermMaker as thats what it is! and config should change with it - maybe call "plugin" in config instead of group? Also im wondering if char change listener and char list change listener should just be replaced with a TermListChange event? to make it more destination oriented and less about the source? a listener just cares if theres new terms - a listener doesnt care if that happened via char list or char change or who knows what also setDestinationField needs to take a list This should be replaced by OntologyMakerI - phase out! thiscould be CharOntMakerI but i dont think thats necasary

Classes in phenote.dataadapter that implement OntologyMakerI

class	AbstractGroupAdapter
class	AllFieldsGroupAdapter
class	OntologyMaker

Uses of OntologyMakerI in phenote.dataadapter.fly

Classes in phenote.dataadapter.fly that implement OntologyMakerI

class

FlyGenotypeGroupAdapter Makes fly style genotype from locus allele 1, locus allele 2, non locus allele, and accesories - with datatags LA1, LA2, NLA, ACC

class

ProformaAlleleParser not sure if this is an appropriate implementation of GroupAdapterI, group adapters originally were groups of fields this is not, but one thing group adapters do is make terms/ontology on the fly - and thats what this does - but it does make ya wanna change the name of GroupAdap if it applies to things that arent even groups of terms maybe TermMaker? theres really 2 things going on - grouping of fields and making of terms - and character template which is a grouping of fields but it makes truncated char lists not terms - but char temp is not a group adapteri but maybe should be? - hmmmm - i think grouping of fields needs to be separated from making of terms and making of characters - i think group adapter should be renamed TermMaker as thats what it is! rename ProformaAlleleOntMaker?

Uses of OntologyMakerI in phenote.dataadapter.worm

Classes in phenote.dataadapter.worm that implement OntologyMakerI

class

WormReferenceGroupAdapter

Uses of OntologyMakerI in phenote.gui.actions

Constructors in phenote.gui.actions with parameters of type OntologyMakerI

MakeOntolAction(OntologyMakerI om)