phenote.dataadapter.delimited
Class DelimitedChar

java.lang.Object
  phenote.dataadapter.delimited.DelimitedChar

public class DelimitedChar
extends java.lang.Object

I stole this from phenosyntaxchar, but modifying for tab delimited. will initially hard code in the tab-delimiter, but eventually it should be generic to handle any delimiter. A phenotype character thats basically a dataadapter object for datamodel CharacterI.

Nested Class Summary

(package private) class	DelimitedChar.BadCharException
(package private) class	DelimitedChar.SyntaxParseException

Constructor Summary

DelimitedChar()

DelimitedChar(CharacterI ch)

Method Summary

(package private) CharacterI	getCharacter()
(package private) java.lang.String	getDelimitedHeaderString()
(package private) java.lang.String	getDelimitedString()
static java.lang.String	makeDelimitedHeaderString() the idea for the tab-delimited output writer is to 1) identify what the header/column names should be (like they present in the phenote window: pub, entity, quality, etc.).
(package private) void	parseLine(java.lang.String line)
(package private) void	setHeader(java.lang.String headerLine) make DelimFieldParsers from headerLine, throw exception if line fails to be a header

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DelimitedChar

DelimitedChar()

DelimitedChar

DelimitedChar(CharacterI ch)

Method Detail

getDelimitedString

java.lang.String getDelimitedString()
                              throws DelimitedChar.BadCharException

Throws:

DelimitedChar.BadCharException

getDelimitedHeaderString

java.lang.String getDelimitedHeaderString()
                                    throws DelimitedChar.BadCharException

Throws:

DelimitedChar.BadCharException

makeDelimitedHeaderString

public static java.lang.String makeDelimitedHeaderString()

the idea for the tab-delimited output writer is to 1) identify what the header/column names should be (like they present in the phenote window: pub, entity, quality, etc.). Need to include all column headers even if there isn't data for them...they'd just have a blank column...in future will get smart to this. basically its creating the headers based on the config file. 2) insert delimiter (initially "tab") between each field 3) write each phenotype character on an individual line under headers. one PC for each hard return should i include the config file on the first line?...maybe in the future

setHeader

void setHeader(java.lang.String headerLine)
         throws DelimitedEx

make DelimFieldParsers from headerLine, throw exception if line fails to be a header

Throws:

DelimitedEx

parseLine

void parseLine(java.lang.String line)
         throws DelimitedEx

Throws:

DelimitedEx

getCharacter

CharacterI getCharacter()