phenote.dataadapter.ncbi
Interface NCBIDataAdapterI

All Known Implementing Classes:

OMIMAdapter, PubMedAdapter

public interface NCBIDataAdapterI

Note, for retmode, see http://www.ncbi.nlm.nih.gov/entrez/query/static/efetchlit_help.html for options This is the interface for the NCBI eutils data adapters. These are for reading with the soapy eutils (eutils.jar) or RESTful requests only.

Author:

Nicole Washington

Field Summary

static java.lang.String

ncbiURL

Method Summary

java.lang.String	getLookupButtonImage() The label that gets displayed on the lookup button.
java.lang.String	getName()
java.util.List<java.lang.String>	getQueryableGroups() returns a list of group strings of groups that can be queried for with query method
boolean	isFieldQueryable(java.lang.String field) return true if data adapter can query for the char field
org.obo.datamodel.Instance	query(java.lang.String id)
java.lang.String	query(java.lang.String id, java.lang.String database) Throws exception if query fails, and no data to return Query with query string of type field for group

Field Detail

ncbiURL

static final java.lang.String ncbiURL

See Also:

Constant Field Values

Method Detail

isFieldQueryable

boolean isFieldQueryable(java.lang.String field)

return true if data adapter can query for the char field

getQueryableGroups

java.util.List<java.lang.String> getQueryableGroups()

returns a list of group strings of groups that can be queried for with query method

query

java.lang.String query(java.lang.String id,
                       java.lang.String database)
                       throws DataAdapterEx

Throws exception if query fails, and no data to return Query with query string of type field for group

Throws:

DataAdapterEx

query

org.obo.datamodel.Instance query(java.lang.String id)

getLookupButtonImage

java.lang.String getLookupButtonImage()

The label that gets displayed on the lookup button. Different functions might have different buttons in the future.

getName

java.lang.String getName()