phenote.dataadapter.phenosyntax
Class PhenoSyntaxChar

java.lang.Object
  phenote.dataadapter.phenosyntax.PhenoSyntaxChar

public class PhenoSyntaxChar
extends java.lang.Object

A phenotype character thats basically a dataadapter object for datamodel CharacterI. It can make a phenosyntax string from a CharacterI and make a CharacterI from a phenosyntax string e.g. E=head Q=large See http://www.fruitfly.org/~cjm/obd/pheno-syntax.html for a full description of pheno syntax. Phenote additions: syntax doesnt do genotype or genetic context but heck we need them - so i added GT=genotype (do we gen context?) GC=geneticContext

Nested Class Summary

(package private) class	PhenoSyntaxChar.BadCharException
(package private) class	PhenoSyntaxChar.SyntaxParseException

Constructor Summary

PhenoSyntaxChar()

PhenoSyntaxChar(CharacterI ch)

Method Summary

(package private) CharacterI	getCharacter()
(package private) java.lang.String	getPhenoSyntaxString()
(package private) void	parseLine(java.lang.String line) Parse syntax line into character

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhenoSyntaxChar

PhenoSyntaxChar()

PhenoSyntaxChar

PhenoSyntaxChar(CharacterI ch)

Method Detail

getPhenoSyntaxString

java.lang.String getPhenoSyntaxString()

parseLine

void parseLine(java.lang.String line)
         throws PhenoSyntaxChar.SyntaxParseException

Parse syntax line into character

Throws:

PhenoSyntaxChar.SyntaxParseException

getCharacter

CharacterI getCharacter()