phenote.dataadapter.phenosyntax
Class PhenoSyntaxFileAdapter

java.lang.Object
  phenote.dataadapter.AbstractFileAdapter
      phenote.dataadapter.phenosyntax.PhenoSyntaxFileAdapter

All Implemented Interfaces:

DataAdapterI

public class PhenoSyntaxFileAdapter
extends AbstractFileAdapter

Writes pheno syntax characters to a file. See http://www.fruitfly.org/~cjm/obd/pheno-syntax.html for a full description of pheno syntax. Its basically a human readable version of pheno xml e.g. E=head Q=large This should be renamed TagValueFileAdapter as thats what it really is Also DataAdapterI should be renamed FileDataAdapterI to distinguish from QueryableDataAdapterI

Field Summary

Fields inherited from class phenote.dataadapter.AbstractFileAdapter

file

Constructor Summary

PhenoSyntaxFileAdapter()

Method Summary

void	commit(CharacterListI charList)
void	commit(CharacterListI charList, java.io.File f)
void	load() this should return CharacterList and caller should load CharListMan or CLM makes the call itself?
CharacterListI	load(java.io.File f)

Methods inherited from class phenote.dataadapter.AbstractFileAdapter

getDescription, getExtensions, hasExtension, setAdapterValue, setDescription, setExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhenoSyntaxFileAdapter

public PhenoSyntaxFileAdapter()

Method Detail

load

public void load()

this should return CharacterList and caller should load CharListMan or CLM makes the call itself?

load

public CharacterListI load(java.io.File f)

commit

public void commit(CharacterListI charList)

commit

public void commit(CharacterListI charList,
                   java.io.File f)