phenote.datamodel
Class Character

java.lang.Object
  phenote.datamodel.AbstractCharacter
      phenote.datamodel.Character

All Implemented Interfaces:

CharacterI

public class Character
extends AbstractCharacter
implements CharacterI

The Character datamodel is a generic hash of CharField-CharFieldValues CharFieldValues are free text or from ontologies This is the straightontabular implementation of CharacterI In the table view a character represents a row

Constructor Summary

Character()
should only be constrcuted from factory

Method Summary

void	addComparison(org.obo.datamodel.OBOProperty rel, CharacterI relChar) throws CharacterEx if not implemented (Character doesnt implement) OBOAnnotation implements
CharacterI	cloneCharacter()
java.util.List<CharField>	getAllCharFields() return all char fields configured, both currently used or null in char
CharField	getCharFieldForName(java.lang.String fieldName)
CharFieldValue	getValue(CharField cf) generic getter - getting single value or 1st item of list
java.util.List<CharFieldValue>	getValueList(CharField cf) im wondering if a better way is to make CFVs recursive, so a CFV can be a list of CFV's - that might be easier - not sure
java.lang.String	getValueString(CharField cf) returns string for charfield value of char field, no matter what type, return "" if null value?? throw ex? used for sorting CharList
java.lang.String	getValueString(java.lang.String field)
boolean	hasNoContent()
boolean	hasValue(CharField cf) return false if getValue is null or isEmpty
boolean	hasValue(java.lang.String fieldName)
void	setValue(CharField cf, CharFieldValue cfv) for generic fields its just a map from char field to char field value
boolean	supportsComparisons() Returns true if charI implementation supports comparisons, eg Character doesnt AnnotChar does
java.lang.String	toString()

Methods inherited from class phenote.datamodel.AbstractCharacter

eq, equals, fieldEquals, getEntity, getEntityField, getGenConField, getGeneticContext, getGenotype, getGenotypeField, getOboAnnotation, getPub, getPubField, getQualField, getQuality, getTerm, getTerm, hasGeneticContext, hasOboAnnotation, hasPub, setEntity, setGeneticContext, setGenotype, setPub, setQuality, setValue, setValue, setValue, setValue, setValue

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface phenote.datamodel.CharacterI

equals, fieldEquals, getEntity, getGeneticContext, getGenotype, getOboAnnotation, getPub, getQuality, getTerm, hasGeneticContext, hasOboAnnotation, hasPub, setEntity, setGeneticContext, setGenotype, setPub, setQuality, setValue, setValue, setValue

Constructor Detail

Character

Character()

should only be constrcuted from factory

Method Detail

setValue

public void setValue(CharField cf,
                     CharFieldValue cfv)

for generic fields its just a map from char field to char field value

Specified by:

setValue in interface CharacterI

getValue

public CharFieldValue getValue(CharField cf)

generic getter - getting single value or 1st item of list

Specified by:

getValue in interface CharacterI

getValueList

public java.util.List<CharFieldValue> getValueList(CharField cf)

Description copied from interface: CharacterI

im wondering if a better way is to make CFVs recursive, so a CFV can be a list of CFV's - that might be easier - not sure

Specified by:

getValueList in interface CharacterI

getValueString

public java.lang.String getValueString(CharField cf)

returns string for charfield value of char field, no matter what type, return "" if null value?? throw ex? used for sorting CharList

Specified by:

getValueString in interface CharacterI

Overrides:

getValueString in class AbstractCharacter

getValueString

public java.lang.String getValueString(java.lang.String field)
                                throws CharFieldException

Specified by:

getValueString in interface CharacterI

Overrides:

getValueString in class AbstractCharacter

Throws:

CharFieldException

hasValue

public boolean hasValue(CharField cf)

return false if getValue is null or isEmpty

Specified by:

hasValue in interface CharacterI

Overrides:

hasValue in class AbstractCharacter

hasValue

public boolean hasValue(java.lang.String fieldName)

Specified by:

hasValue in interface CharacterI

Overrides:

hasValue in class AbstractCharacter

getCharFieldForName

public CharField getCharFieldForName(java.lang.String fieldName)
                              throws CharFieldException

Specified by:

getCharFieldForName in interface CharacterI

Overrides:

getCharFieldForName in class AbstractCharacter

Throws:

CharFieldException

getAllCharFields

public java.util.List<CharField> getAllCharFields()

return all char fields configured, both currently used or null in char

Specified by:

getAllCharFields in interface CharacterI

Overrides:

getAllCharFields in class AbstractCharacter

cloneCharacter

public CharacterI cloneCharacter()

Specified by:

cloneCharacter in interface CharacterI

hasNoContent

public boolean hasNoContent()

Specified by:

hasNoContent in interface CharacterI

Overrides:

hasNoContent in class AbstractCharacter

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

supportsComparisons

public boolean supportsComparisons()

Description copied from interface: CharacterI

Returns true if charI implementation supports comparisons, eg Character doesnt AnnotChar does

Specified by:

supportsComparisons in interface CharacterI

addComparison

public void addComparison(org.obo.datamodel.OBOProperty rel,
                          CharacterI relChar)
                   throws CharacterEx

Description copied from class: AbstractCharacter

throws CharacterEx if not implemented (Character doesnt implement) OBOAnnotation implements

Specified by:

addComparison in interface CharacterI

Specified by:

addComparison in class AbstractCharacter

Throws:

CharacterEx