phenote.datamodel
Class PhenotypeCharacterWrapper

java.lang.Object
  phenote.datamodel.PhenotypeCharacterWrapper

All Implemented Interfaces:

PhenotypeCharacterI

public class PhenotypeCharacterWrapper
extends java.lang.Object
implements PhenotypeCharacterI

Provides a mapping between a character representing a phenotype, such as is required by the PhenoXML adapter, and the standard character with generic fields. Some of these properties are provided by CharacterI, but putting everything here will allow CharacterI to remain generic.

Author:

Jim Balhoff

Nested Class Summary

Nested classes/interfaces inherited from interface phenote.datamodel.PhenotypeCharacterI

PhenotypeCharacterI.PhenotypeCharacterFactory

Constructor Summary

PhenotypeCharacterWrapper(CharacterI character)

Method Summary

org.obo.datamodel.OBOClass	getAdditionalEntity()
CharacterI	getCharacter()
int	getCount()
java.lang.String	getDescription()
org.obo.datamodel.OBOClass	getEntity()
org.obo.datamodel.OBOClass	getGeneticContext()
java.lang.String	getGenotype()
float	getMeasurement()
java.lang.String	getPub()
org.obo.datamodel.OBOClass	getQuality()
org.obo.datamodel.OBOClass	getUnit()
boolean	hasCount()
boolean	hasMeasurement()
void	setAdditionalEntity(org.obo.datamodel.OBOClass term)
void	setCount(int count)
void	setDescription(java.lang.String desc)
void	setEntity(org.obo.datamodel.OBOClass term)
void	setGeneticContext(org.obo.datamodel.OBOClass term)
void	setGenotype(java.lang.String genotype)
void	setMeasurement(float measurement)
void	setPub(java.lang.String publication)
void	setQuality(org.obo.datamodel.OBOClass term)
void	setUnit(org.obo.datamodel.OBOClass term)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhenotypeCharacterWrapper

public PhenotypeCharacterWrapper(CharacterI character)

Method Detail

getCharacter

public CharacterI getCharacter()

getEntity

public org.obo.datamodel.OBOClass getEntity()

Specified by:

getEntity in interface PhenotypeCharacterI

setEntity

public void setEntity(org.obo.datamodel.OBOClass term)

Specified by:

setEntity in interface PhenotypeCharacterI

getQuality

public org.obo.datamodel.OBOClass getQuality()

Specified by:

getQuality in interface PhenotypeCharacterI

setQuality

public void setQuality(org.obo.datamodel.OBOClass term)

Specified by:

setQuality in interface PhenotypeCharacterI

getAdditionalEntity

public org.obo.datamodel.OBOClass getAdditionalEntity()

Specified by:

getAdditionalEntity in interface PhenotypeCharacterI

setAdditionalEntity

public void setAdditionalEntity(org.obo.datamodel.OBOClass term)

Specified by:

setAdditionalEntity in interface PhenotypeCharacterI

hasCount

public boolean hasCount()

Specified by:

hasCount in interface PhenotypeCharacterI

getCount

public int getCount()

Specified by:

getCount in interface PhenotypeCharacterI

setCount

public void setCount(int count)

Specified by:

setCount in interface PhenotypeCharacterI

hasMeasurement

public boolean hasMeasurement()

Specified by:

hasMeasurement in interface PhenotypeCharacterI

getMeasurement

public float getMeasurement()

Specified by:

getMeasurement in interface PhenotypeCharacterI

setMeasurement

public void setMeasurement(float measurement)

Specified by:

setMeasurement in interface PhenotypeCharacterI

getUnit

public org.obo.datamodel.OBOClass getUnit()

Specified by:

getUnit in interface PhenotypeCharacterI

setUnit

public void setUnit(org.obo.datamodel.OBOClass term)

Specified by:

setUnit in interface PhenotypeCharacterI

getPub

public java.lang.String getPub()

setPub

public void setPub(java.lang.String publication)

getGenotype

public java.lang.String getGenotype()

setGenotype

public void setGenotype(java.lang.String genotype)

getGeneticContext

public org.obo.datamodel.OBOClass getGeneticContext()

setGeneticContext

public void setGeneticContext(org.obo.datamodel.OBOClass term)

getDescription

public java.lang.String getDescription()

Specified by:

getDescription in interface PhenotypeCharacterI

setDescription

public void setDescription(java.lang.String desc)

Specified by:

setDescription in interface PhenotypeCharacterI