Uses of Class
phenote.datamodel.CharField

Packages that use CharField

phenote.charactertemplate
phenote.config
phenote.dataadapter	Generalized methods for creating customized Data Adapters
phenote.datamodel
phenote.edit
phenote.gui.field

Uses of CharField in phenote.charactertemplate

Methods in phenote.charactertemplate that return CharField

CharField	TemplateChooser.getCharField()
CharField	AbstractTemplateChooser.getCharField()

Methods in phenote.charactertemplate with parameters of type CharField

void	TemplateChooser.setCharField(CharField field)
void	AbstractTemplateChooser.setCharField(CharField field)

Uses of CharField in phenote.config

Methods in phenote.config that return CharField

CharField	FieldConfig.getCharField() Actually creates char field if null, as char fields utimately come from field configs - so this is funny but its actually not funny
CharField	Config.getEnbldCharField(int index)

Methods in phenote.config that return types with arguments of type CharField

java.util.List<CharField>

Config.getCharFieldsForSyntaxAbbrev(java.lang.String abb) kinda silly to return list?? so there are 2 fields for "Tag" which perhaps is silly but thats whats happening so need to deal with it

Methods in phenote.config with parameters of type CharField

java.lang.String	Config.getSyntaxAbbrevForCharField(CharField cf)
(package private) boolean	FieldConfig.hasCharField(CharField cf)
boolean	Config.isVisible(CharField cf)
void	FieldConfig.setCharField(CharField cf)

Constructors in phenote.config with parameters of type CharField

FieldConfig(CharFieldEnum fieldEnum, CharField cf)
for auto fields like date_created

Uses of CharField in phenote.dataadapter

Constructors in phenote.dataadapter with parameters of type CharField

RequiredFieldConstraint(CharField cf, boolean doFailure)

Uses of CharField in phenote.datamodel

Methods in phenote.datamodel that return CharField

CharField	CharFieldManager.getAutoAnnotField() Returns char field that is type AUTO_ANNOT_FIELD.
CharField	CharFieldValue.getCharField()
CharField	CharFieldManager.getCharField(int i) get char field for int.
CharField	CharFieldManager.getCharField(int i, java.lang.String group)
CharField	CharFieldManager.getCharFieldForName(java.lang.String fieldName) Actually checks both name & tag of char fields for match - rename getCharField?
CharField	CharacterI.getCharFieldForName(java.lang.String fieldName)
CharField	Character.getCharFieldForName(java.lang.String fieldName)
CharField	AbstractCharacter.getCharFieldForName(java.lang.String fieldName)
CharField	CharFieldManager.getComparisonField() return COMPARISON field if have one, if dont should we: 1) create one on demand (like date)? sep method? 2) return null 3) throw ex? returning null for now
CharField	CharFieldManager.getDateCreatedField() If date_created doesnt exist then create it - its a fundamental may want a configuration for this - presumptious?
protected CharField	AbstractCharacter.getEntityField()
protected CharField	AbstractCharacter.getGenConField()
protected CharField	AbstractCharacter.getGenotypeField()
CharField	CharField.getPickListSourceField()
protected CharField	AbstractCharacter.getPubField()
protected CharField	AbstractCharacter.getQualField()

Methods in phenote.datamodel that return types with arguments of type CharField

java.util.List<CharField>	CharacterI.getAllCharFields() generic fields!!!
java.util.List<CharField>	Character.getAllCharFields() return all char fields configured, both currently used or null in char
java.util.List<CharField>	AbstractCharacter.getAllCharFields()
java.util.List<CharField>	CharFieldManager.getCharFieldList() This is where the ontologies are in a generic fashion.
java.util.List<CharField>	CharFieldManager.getCharFieldListForGroup(java.lang.String groupName) should this be stored as a data structure?
java.util.List<CharField>	CharFieldManager.getPostCompFields() return list of all char fields that allow post comps

Methods in phenote.datamodel with parameters of type CharField

void	CharFieldManager.addField(CharField cf) OntologyDataAdapter adds fields from field configs
CharFieldValue	CharFieldValue.cloneCharFieldValue(CharacterI newCharacter, CharField newField)
static CharFieldValue	CharFieldValue.emptyValue(CharacterI c, CharField cf)
boolean	CharFieldEnum.equals(CharField cf)
boolean	CharacterI.fieldEquals(CharacterI c, CharField cf)
boolean	AbstractCharacter.fieldEquals(CharacterI c, CharField cf) by default check if single char field val from field is equal, eventually should get hip to potential lists of values
protected CharFieldValue	AnnotationCharacter.getCharFieldValue(org.obo.datamodel.DanglingObject oboInst, CharacterI character, CharField field)
CharFieldValue	BasicAnnotationMappingDriver.getCharFieldValue(org.obo.datamodel.Instance oboInst, CharacterI character, CharField field)
protected CharFieldValue	AnnotationCharacter.getCharFieldValue(org.obo.datamodel.Instance oboInst, CharacterI character, CharField field)
CharFieldValue	BasicAnnotationMappingDriver.getCharFieldValue(org.obo.datamodel.OBOClass oboclass, CharacterI character, CharField field)
CharFieldValue	AnnotationMappingDriver.getCharFieldValue(org.obo.datamodel.OBOClass oboclass, CharacterI character, CharField field)
protected CharFieldValue	AnnotationCharacter.getCharFieldValue(org.obo.datamodel.OBOClass oboClass, CharacterI character, CharField field)
CharFieldValue	BasicAnnotationMappingDriver.getCharFieldValue(java.lang.String s, CharacterI character, CharField field)
CharFieldValue	AnnotationMappingDriver.getCharFieldValue(java.lang.String s, CharacterI character, CharField field)
protected CharFieldValue	AnnotationCharacter.getCharFieldValue(java.lang.String s, CharacterI character, CharField field)
org.obo.datamodel.OBOProperty	PhenotypeAssociationMappingDriver.getPropertyForField(CharField cf)
org.obo.datamodel.OBOProperty	EnvironmentalSampleAssociationMappingDriver.getPropertyForField(CharField cf)
org.obo.datamodel.OBOProperty	DefaultMappingDriver.getPropertyForField(CharField cf)
org.obo.datamodel.OBOProperty	BasicAnnotationMappingDriver.getPropertyForField(CharField cf)
org.obo.datamodel.OBOProperty	AnnotationMappingDriver.getPropertyForField(CharField cf)
protected org.obo.datamodel.OBOProperty	AnnotationCharacter.getPropertyForField(CharField cf)
protected org.obo.datamodel.OBOClass	AbstractCharacter.getTerm(CharField cf) Throws char field exception if char field is not a term, thus lists of terms throw an exception as they are not technically a single term
CharFieldValue	CharacterI.getValue(CharField cf)
CharFieldValue	Character.getValue(CharField cf) generic getter - getting single value or 1st item of list
CharFieldValue	AnnotationCharacter.getValue(CharField cf)
java.util.List<CharFieldValue>	CharacterI.getValueList(CharField cf) im wondering if a better way is to make CFVs recursive, so a CFV can be a list of CFV's - that might be easier - not sure
java.util.List<CharFieldValue>	Character.getValueList(CharField cf)
java.util.List<CharFieldValue>	AnnotationCharacter.getValueList(CharField cf)
java.lang.String	CharacterI.getValueString(CharField cf) used in particular for lists of values
java.lang.String	Character.getValueString(CharField cf) returns string for charfield value of char field, no matter what type, return "" if null value?? throw ex? used for sorting CharList this returns names not ids for terms
java.lang.String	AbstractCharacter.getValueString(CharField cf)
boolean	CharacterI.hasValue(CharField cf)
boolean	Character.hasValue(CharField cf) return false if getValue is null or isEmpty
boolean	AbstractCharacter.hasValue(CharField cf)
boolean	PhenotypeAssociationMappingDriver.isObjectDifferentiaField(CharField cf) both entity and entity2 are object differentia fields entity is inheres_in, E2 is towards??
boolean	EnvironmentalSampleAssociationMappingDriver.isObjectDifferentiaField(CharField cf) both entity and entity2 are object differentia fields entity is inheres_in, E2 is towards??
boolean	DefaultMappingDriver.isObjectDifferentiaField(CharField cf) both entity and entity2 are object differentia fields entity is inheres_in, E2 is towards??
boolean	BasicAnnotationMappingDriver.isObjectDifferentiaField(CharField cf)
boolean	AnnotationMappingDriver.isObjectDifferentiaField(CharField cf)
boolean	BasicAnnotationMappingDriver.isObjectField(CharField cf)
boolean	AnnotationMappingDriver.isObjectField(CharField cf)
protected boolean	AnnotationCharacter.isObjectField(CharField cf)
boolean	PhenotypeAssociationMappingDriver.isObjectGenusField(CharField cf)
boolean	EnvironmentalSampleAssociationMappingDriver.isObjectGenusField(CharField cf)
boolean	DefaultMappingDriver.isObjectGenusField(CharField cf)
boolean	BasicAnnotationMappingDriver.isObjectGenusField(CharField cf)
boolean	AnnotationMappingDriver.isObjectGenusField(CharField cf)
boolean	PhenotypeAssociationMappingDriver.isSubjectField(CharField cf)
boolean	EnvironmentalSampleAssociationMappingDriver.isSubjectField(CharField cf)
boolean	DefaultMappingDriver.isSubjectField(CharField cf)
boolean	BasicAnnotationMappingDriver.isSubjectField(CharField cf)
boolean	AnnotationMappingDriver.isSubjectField(CharField cf)
protected boolean	AnnotationCharacter.isSubjectField(CharField cf)
(package private) static CharFieldValue	CharFieldValue.makeDate(java.lang.String dateString, CharacterI c, CharField cf) dateString is a date, if not valid date throws ParseEx
static CharFieldValue	CharFieldValue.makeListParentValue(CharacterI c, CharField cf)
void	CharacterI.setValue(CharField cf, CharFieldValue cfv)
void	Character.setValue(CharField cf, CharFieldValue cfv) for generic fields its just a map from char field to char field value
void	AnnotationCharacter.setValue(CharField cf, CharFieldValue cfv)
protected void	AbstractCharacter.setValue(CharField cf, org.obo.datamodel.OBOClass term)
CharFieldValue	CharacterI.setValue(CharField cf, java.lang.String valueString)
CharFieldValue	AbstractCharacter.setValue(CharField cf, java.lang.String s) if term field, string should be id, obo class will be searched for, if class not found then dangler is created.
CharFieldValue	CharacterI.setValue(CharField cf, java.lang.String s, java.lang.String danglerName) if term field, string should be id, obo class will be searched for, if class not found then dangler is created.
CharFieldValue	AbstractCharacter.setValue(CharField cf, java.lang.String s, java.lang.String danglerName) if term field, string should be id, obo class will be searched for, if class not found then dangler is created.

Constructors in phenote.datamodel with parameters of type CharField

CharFieldValue(java.util.Date d, CharacterI c, CharField cf)

CharFieldValue(org.obo.datamodel.OBOClass o, CharacterI c, CharField cf)
SINGLE VALUE term/class - not list

CharFieldValue(java.lang.String value, CharacterI c, CharField cf)

Uses of CharField in phenote.edit

Methods in phenote.edit with parameters of type CharField

boolean	UpdateTransaction.isUpdateForCharField(CharField cf)
boolean	TransactionI.isUpdateForCharField(CharField cf)
boolean	DeleteTransaction.isUpdateForCharField(CharField c)
boolean	CompoundTransaction.isUpdateForCharField(CharField cf) queries 1st child for this.
boolean	CharChangeEvent.isUpdateForCharField(CharField cf)
boolean	AddTransaction.isUpdateForCharField(CharField cf) this is for update trans - return false
static CompoundTransaction	CompoundTransaction.makeUpdate(java.util.List<CharacterI> l, CharField c, CharFieldValue v)
static CompoundTransaction	CompoundTransaction.makeUpdate(java.util.List<CharacterI> l, CharField c, org.obo.datamodel.OBOClass o)
static CompoundTransaction	CompoundTransaction.makeUpdate(java.util.List<CharacterI> crs, CharField cf, java.lang.String v)
protected void	UpdateTransaction.setOldValue(CharacterI c, CharField cf)
void	EditManager.updateModel(java.util.List<CharacterI> l, CharField cf, java.lang.String s, java.lang.Object src)

Constructors in phenote.edit with parameters of type CharField

UpdateTransaction(CharacterI c, CharField cf, CharFieldValue v)
used by character list field gui in character template, v is new value also used by comparisons deals with lists via CFV.makeNewValue im not sure how this works as makeNewValue seems funny

UpdateTransaction(CharacterI c, CharField cf, org.obo.datamodel.OBOClass newTerm)

UpdateTransaction(CharacterI c, CharField cf, java.lang.String newString)

Uses of CharField in phenote.gui.field

Fields in phenote.gui.field declared as CharField

protected static CharField

CharFieldMatcherEditor.ANY_FIELD

Methods in phenote.gui.field that return CharField

protected CharField

CharFieldGui.getCharField()

Methods in phenote.gui.field with parameters of type CharField

protected boolean	CharFieldGui.areCharactersEqualForCharField(java.util.List<CharacterI> characters, CharField charField) return true if all values for char field in all characters are the same value(equal) - used for multi select
static CharFieldGui	CharFieldGui.makeCharFieldGui(CharField charField, int minCompChars) CharFieldGui for main window not post comp box - factory method, make appropriate CFG subclass from type of charField - minCompChars is not used at moment - may come back
static CharFieldGui	CharFieldGui.makePostCompTermList(CharField cf, java.lang.String label, int minCompChars) make term completion lists for post comp window (genus & diff), they dont listen to selection nor edit model - isolated
static RelationCompList	CharFieldGui.makeRelationList(CharField cf) createPostCompRelationList - will relation lists ever be in main window and if so will they ever have listeners enabled - maybe, probably not
void	CharFieldMatcherEditor.setEditedCharField(CharField charField) Sets the charfield used to filter the characters

Method parameters in phenote.gui.field with type arguments of type CharField

void	CharFieldMatcherEditor.setCharFields(java.util.List<CharField> charFields) Sets the charfields which the user can choose from for filtering characters.

Constructors in phenote.gui.field with parameters of type CharField

AbstractAutoCompList(CharField cf)

AbstractAutoCompList(CharField cf, int minCompChars)

BigTextPopup(java.awt.Frame owner, CharField cf, java.util.List<CharacterI> chars)

CharacterListFieldGui(CharField charField)

CharFieldGui(CharField charField)

CharFieldMatcher(CharField charField, java.lang.String filter, boolean broad)

FreeTextField(CharField charField)

IdFieldGui(CharField cf)

PickListFieldGui(CharField charField)

PostCompGui(CharField charField, EditManager eManager, SelectionManager selManager, ca.odell.glazedlists.swing.EventSelectionModel<CharacterI> selModel, java.awt.Frame ownerFrame, int minCompChars)

ReadOnlyFieldGui(CharField charfield)
for now - refactor

RelationCompList(CharField c)

TermCompList(CharField cf, int minCompChars)

Constructor parameters in phenote.gui.field with type arguments of type CharField

CharFieldMatcherEditor(java.util.List<CharField> charFields)
Creates a new CharFieldMatcherEditor which will filter characters composed of the CharFields in charFields.