Uses of Class
phenote.datamodel.CharFieldException

Packages that use CharFieldException

phenote.datamodel
phenote.matrix.model

Uses of CharFieldException in phenote.datamodel

Methods in phenote.datamodel that throw CharFieldException

CharField	CharFieldManager.getCharFieldForName(java.lang.String fieldName) Actually checks both name & tag of char fields for match - rename getCharField?
CharField	CharacterI.getCharFieldForName(java.lang.String fieldName)
CharField	Character.getCharFieldForName(java.lang.String fieldName)
CharField	AbstractCharacter.getCharFieldForName(java.lang.String fieldName)
Ontology	CharFieldManager.getComparisonRelationOntology() Return ontology to use for statement comparisons this needs work.
protected CharField	AbstractCharacter.getEntityField()
protected CharField	AbstractCharacter.getGenConField()
protected CharField	AbstractCharacter.getGenotypeField()
java.lang.String	CharacterI.getIdOrValue(java.lang.String field) convenience function, if field is a term then return ID, otherwise return field value as String throws ex if field doesnt exist
java.lang.String	AbstractCharacter.getIdOrValue(java.lang.String field) convenience function, if field is a term then return ID, otherwise return field value as String throws ex if field doesnt exist
protected CharField	AbstractCharacter.getPubField()
protected CharField	AbstractCharacter.getQualField()
protected org.obo.datamodel.OBOClass	AbstractCharacter.getTerm(CharField cf) Throws char field exception if char field is not a term, thus lists of terms throw an exception as they are not technically a single term
org.obo.datamodel.OBOClass	CharacterI.getTerm(java.lang.String fieldName)
org.obo.datamodel.OBOClass	AbstractCharacter.getTerm(java.lang.String field)
java.lang.String	CharacterI.getValueString(java.lang.String fieldName)
java.lang.String	Character.getValueString(java.lang.String field) throws exception if field doesnt exist
java.lang.String	AbstractCharacter.getValueString(java.lang.String field)
CharFieldValue	CharField.makeValue(CharacterI c, java.lang.String valueString) if free text returns string charfieldValue, for ontology field valueString is id and searches ontologies for id, throws CharFieldException if invalid date for date field (used to for term not found but now creates dangler instead) this deals with postcomp too) if term is dangler then dangler gets id (valueString) but no name use makeValue(Char,String,String) to get dangler name set as well also deals with lists in format: "xxx","yyy",...
CharFieldValue	CharField.makeValue(CharacterI c, java.lang.String valueString, java.lang.String danglerName) makes value - value string for term is id - if term is dangler (not in ontology) and danglerName is non null, then danglers name is set to danglerName, danglerName is ONLY used for danglers
CharFieldValue	CharacterI.setValue(CharField cf, java.lang.String valueString)
CharFieldValue	AbstractCharacter.setValue(CharField cf, java.lang.String s) if term field, string should be id, obo class will be searched for, if class not found then dangler is created.
CharFieldValue	CharacterI.setValue(CharField cf, java.lang.String s, java.lang.String danglerName) if term field, string should be id, obo class will be searched for, if class not found then dangler is created.
CharFieldValue	AbstractCharacter.setValue(CharField cf, java.lang.String s, java.lang.String danglerName) if term field, string should be id, obo class will be searched for, if class not found then dangler is created.
CharFieldValue	CharacterI.setValue(java.lang.String fieldString, java.lang.String valueString) Looks up CharField with fieldString using both field name & datatag, if CharField isnt found throws CharFieldException.
CharFieldValue	AbstractCharacter.setValue(java.lang.String fieldString, java.lang.String valueString) Returns CharFieldValue created

Uses of CharFieldException in phenote.matrix.model

Methods in phenote.matrix.model that throw CharFieldException

void	MatrixController.buildMatrix() Gets the current list of characters and calls methods to build the rows and columns of the matrix