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Class Summary |
| AbstractCharacter |
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| AnnotationCharacter |
CharacterI for OBOAnnotations |
| BasicAnnotationMappingDriver |
Maps ENTITY to subject and QUALITY to object
but is this proper? shouldnt genotype be subject? |
| Character |
The Character datamodel is a generic hash of CharField-CharFieldValues
CharFieldValues are free text or from ontologies
This is the straightontabular implementation of CharacterI
In the table view a character represents a row |
| CharacterIFactory |
Makes instances of CharacterI, according to mode set - OBOAnnotation or Character |
| CharacterList |
i made this as a transferable when i didnt get the whole transferable thing
and now i dont whether to scrap it or not. |
| CharField |
|
| CharFieldManager |
Manages all of the ontologies. |
| CharFieldValue |
At the moment char field values can be Strings, OBOClasses, and dates, and possibly
more coming. |
| Comparison |
for making relations between statements |
| DefaultMappingDriver |
|
| EnvironmentalSampleAssociationMappingDriver |
|
| OboUtil |
changing this from static to non-static so can build post comp object from
multiple rel-diffs |
| Ontology |
Ontology represents at this point the contents of a single obo file (which can
be more than one ontology) an ontology wraps an obo edit OBOSession - at this point
there is one OBOSession per obo file - that may change in the future |
| PhenotypeAssociationMappingDriver |
|
| PhenotypeCharacterWrapper |
Provides a mapping between a character representing a phenotype, such as is required by
the PhenoXML adapter, and the standard character with generic fields. |
| TransferableCharacterList |
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| ValueCharacterList |
A CharacterListI implementation which represents the contents of a CharFieldValue as a
list of characters which can be edited in a separate character table view. |